前編第五章及び第六章（居住者に係る申告、納付及び還付）の規定は、非居住者の総合課税に係る所得税についての申告、納付及び還付について準用する。この場合において、第百十二条第二項（予定納税額の減額の承認の申請手続）中「取引」とあるのは「取引（恒久的施設を有する非居住者にあつては、第百六十一条第一項第一号（国内源泉所得）に規定する内部取引に該当するものを含む。）」と、「同項」とあるのは「前項」と、第百二十条第一項（確定所得申告）中「外国税額控除」とあるのは「第百六十五条の六第一項から第三項まで（非居住者に係る外国税額の控除）の規定による控除」と、同項第三号中「第三章（税額の計算）」とあるのは「第三章（第九十三条（分配時調整外国税相当額控除）及び第九十五条（外国税額控除）を除く。）（税額の計算）並びに第百六十五条の五の三（非居住者に係る分配時調整外国税相当額の控除）及び第百六十五条の六」と、同条第六項中「山林所得を生ずべき業務」とあるのは「山林所得を生ずべき業務（第百六十四条第一項各号（非居住者に対する課税の方法）に定める国内源泉所得に係るものに限る。以下この項において「特定業務」という。）」と、「雑所得を生ずべき業務」とあるのは「雑所得を生ずべき特定業務」と、「業務に」とあるのは「特定業務に」と、「ならない」とあるのは「ならないものとし、国内及び国外の双方にわたつて業務を行う非居住者が同項の規定による申告書を提出する場合には、収入及び支出に関する明細書で財務省令で定めるものを当該申告書に添付しなければならないものとする」と、第百二十二条第一項第一号（還付等を受けるための申告）中「外国税額控除」とあるのは「第百六十五条の六第一項から第三項まで（非居住者に係る外国税額の控除）の規定による控除」と、同条第二項中「第九十五条第二項又は第三項（外国税額控除）」とあるのは「第百六十五条の六第二項又は第三項」と、第百二十三条第二項第六号（確定損失申告）中「第九十五条（外国税額控除）」とあるのは「第百六十五条の六（非居住者に係る外国税額の控除）」と、第百四十三条（青色申告）中「業務」とあるのは「業務（第百六十四条第一項各号（非居住者に対する課税の方法）に定める国内源泉所得に係るものに限る。）」と、第百四十四条（青色申告の承認の申請）中「業務を開始した場合」とあるのは「業務（第百六十四条第一項各号（非居住者に対する課税の方法）に定める国内源泉所得に係るものに限る。）を開始した場合」と、第百四十五条第二号（青色申告の承認申請の却下）中「取引」とあるのは「取引（恒久的施設を有する非居住者にあつては、第百六十一条第一項第一号（国内源泉所得）に規定する内部取引に該当するものを含む。第百四十八条第一項及び第百五十条第一項第三号（青色申告の承認の取消し）において同じ。）」と、第百四十七条（青色申告の承認があつたものとみなす場合）中「業務」とあるのは「業務（第百六十四条第一項各号（非居住者に対する課税の方法）に定める国内源泉所得に係るものに限る。）」と読み替えるものとする。
The provisions of Part II, Chapter V and Chapter VI (Filing of Returns, Payment of Taxes, and Issuance of Refunds for Residents) apply mutatis mutandis to the filing of returns, payment of taxes, and issuance of refunds for a Nonresident's Income Taxes Imposed on Aggregate Income. In such a case, in Article 112, paragraph (2) (Process of Applying for Approval for a Reduction of Tax Prepayments), the term "transactions" is deemed to be replaced with "transactions (for a Nonresident with a permanent establishment, including those falling under internal dealings as prescribed in Article 161, paragraph (1), item (i) (Domestic Source Income))" and the phrase "that paragraph" is deemed to be replaced with "the preceding paragraph"; in Article 120, paragraph (1) (Filing an Income Tax Return), the phrase "foreign tax credit" is deemed to be replaced with "credit under Article 165-6, paragraphs (1) through (3) (Foreign Tax Credit for Nonresidents)"; in item (iii) of that paragraph, the phrase "Chapter III (Calculation of Tax Amount)" is deemed to be replaced with "Chapter III (excluding Article 93 (Credit for Amount Equivalent to Foreign Tax Adjusted at Distribution) and Article 95 (Foreign Tax Credit)) (Calculation of Tax Amount), and Article 165-5-3 (Credit for Amount Equivalent to Foreign Tax Adjusted at Distribution for Nonresidents) and Article 165-6"; in paragraph (6) of that Article, the phrase "business that generates timber income" is deemed to be replaced with "business that generates timber income (limited to business related to the domestic source income specified in the items of Article 164, paragraph (1) (How Nonresidents Are Taxed); hereinafter referred to as "specified business" in this paragraph)", the phrase "business that generates miscellaneous income" is deemed to be replaced with "specified business that generates miscellaneous income", the phrase "that business" is deemed to be replaced with "that specified business", and the phrase "must be attached to that return" is deemed to be replaced with "must be attached to that return, and if a Nonresident conducting business both in Japan and outside Japan files a return under that paragraph, a detailed statement of revenue and expenditures as prescribed by Ministry of Finance Order must be attached to that return"; in Article 122, paragraph (1), item (i) (Filing a Return to Receive a Refund), the phrase "foreign tax credit" is deemed to be replaced with "credit under Article 165-6, paragraphs (1) through (3) (Foreign Tax Credit for Nonresidents)"; in paragraph (2) of that Article, the phrase "Article 95, paragraph (2) or (3) (Foreign Tax Credit)" is deemed to be replaced with "Article 165-6, paragraph (2) or (3)"; in Article 123, paragraph (2), item (vi) (Filing Tax Returns Showing Losses), the phrase "Article 95 (Foreign Tax Credit)" is deemed to be replaced with "Article 165-6 (Foreign Tax Credit for Nonresidents)"; in Article 143 (Blue Returns), the term "business" is deemed to be replaced with "business (limited to business related to the domestic source income specified in the items of Article 164, paragraph (1) (How Nonresidents Are Taxed))"; in Article 144 (Application for Approval to File a Blue Return), the phrase "commences business" is deemed to be replaced with "commences business (limited to business related to the domestic source income specified in the items of Article 164, paragraph (1) (How Nonresidents Are Taxed))"; in Article 145, item (ii) (Denial of Applications for Approval to File a Blue Return), the term "transactions" is deemed to be replaced with "transactions (for a Nonresident with a permanent establishment, including those falling under internal dealings as prescribed in Article 161, paragraph (1), item (i) (Domestic Source Income); the same applies in Article 148, paragraph (1) and Article 150, paragraph (1), item (iii) (Rescission of Approval to File a Blue Return))"; and in Article 147 (When a Resident Is Deemed to Receive Approval to File a Blue Return), the term "business" is deemed to be replaced with "business (limited to business related to the domestic source income specified in the items of Article 164, paragraph (1) (How Nonresidents Are Taxed))".